PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.004G201600.1.p
Common NameSb04g024780, SORBIDRAFT_04g024780
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 400aa    MW: 44739.4 Da    PI: 5.3066
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.004G201600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.62.2e-27572011128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.. 77 
                           lp+G++F+P++ el+ ++L++kv          +  +e+i+++d    i++++P++Lp  +k++ ++ +fF++ +++y  g rk+r   
  Sobic.004G201600.1.p  57 LPAGVKFDPSELELL-QHLEQKVGLGGsrphvlI--DEFIPTIDndegICYSHPENLP-GIKTDGSNAHFFHRVSNAYGCGLRKRRRii 141
                           799************.99****976665666443..333444433445**********.7788999********************668 PP

                   NAM  78 ........tksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                                    ++ +W++tg++k++++ +g  +g +k++v+yk+  r  k+ +++Wvmh+y+l
  Sobic.004G201600.1.p 142 ncnnhtvpDEHVRWHKTGRSKAICD-NGVIKGWRKIMVLYKAsqRGGKPDRANWVMHQYHL 201
                           9988877766999************.999***********7612555666*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-3441220IPR003441NAC domain
PROSITE profilePS5100526.9657220IPR003441NAC domain
PfamPF023652.8E-1158201IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MARSWLITGR GIAKKIRYAA PSANRQIREL IAEARRECPN CSYVIDNSDV AMQWPGLPAG  60
VKFDPSELEL LQHLEQKVGL GGSRPHVLID EFIPTIDNDE GICYSHPENL PGIKTDGSNA  120
HFFHRVSNAY GCGLRKRRRI INCNNHTVPD EHVRWHKTGR SKAICDNGVI KGWRKIMVLY  180
KASQRGGKPD RANWVMHQYH LGEEEDEKDG ELVVSKVFCQ LPNKSMEICE TETAYEEPDA  240
PASVIGPKTP KTNAPQPRHP KNSPCETEQN IPILQDQLLL DSKGEPTMPI ISLEDDATNP  300
VWCAIAEEQQ VVGEASRAQL NSDEPLLCHE DPNSLNDKAL LPLDYPILSQ CRNEMLDWNL  360
NGHGLPDLHN VDLGTPPDFQ LADFQFGSQE SLGSWLDRI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134138RKRRR
2135139KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9624350.0EU962435.1 Zea mays clone 242654 ANAC044 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454112.10.0hypothetical protein SORBIDRAFT_04g024780
SwissprotQ6NQK22e-79NAC8_ARATH; NAC domain-containing protein 8
TrEMBLC5XWJ00.0C5XWJ0_SORBI; Putative uncharacterized protein Sb04g024780
STRINGSb04g024780.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21103799
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.17e-76NAC domain containing protein 44